All functions

apply_amplification_efficiency()

Apply PCR amplification efficiency estimation to a data.frame

apply_delta_delta_ct()

Apply the delta delta Ct calculation to a data.frame

calc_delta_delta_ct()

Calculate delta delta Ct

calc_n_copies()

Calculate number of target copies

calc_sample_sizes()

Calculate sample sizes

coords_to_iso3()

Convert coordinates to ISO country code

download_admin_data()

Download administrative boundaries from geoBoundaries API

download_elevation_data()

Download DEM from AWS Terrain Tiles

download_worldpop_data()

Download WorldPop population raster data

est_amplification_efficiency()

Estimate PCR amplification efficiency

get_admin_data()

Get administrative data for a set of points

get_elevation_data()

Get elevation data

get_esi_data()

Get Evaporative Stress Index (ESI) data

get_geoboundaries_api_data()

Request metadata from GeoBoundaries API

get_hydro_data()

Get hydrological data

get_population_catchment()

Get population counts within catchments of sampling sites

get_population_radius()

Get population counts within a radius of sampling sites

get_precip_data()

Get precipitation data

get_river_discharge_data()

Get river discharge data

get_temp_data()

Get temperature data

logmean()

Calculate the mean in log space

template_es_data

Template environmental sampling data

template_standard_curve

Template standard curve data